GitHub

Routes 10x Chromium FASTQs through QC, STARsolo cell counting, Scanpy QC filtering, and Leiden clustering — all locally, with open-source tools, via natural language in ...

ngs-scrna-plugin is a TARVIA-lab tool for guided, AI-assisted single-cell RNA-seq analysis. From raw 10x Chromium FASTQs to annotated UMAP clusters — ask Claude Code in plain English. "I have 10x v3 ...
IEEE

sigRGCN: A Robust Residual Graph Convolutional Network for scRNA-Seq Data Clustering

Abstract: Clustering is a crucial step in single-cell RNA sequencing (scRNA-seq) data analysis, facilitating the discovery of new cell types and the grouping of similar cells. Recently, graph ...
Ars Technica

Entire Claude Code CLI source code leaks thanks to exposed map file

The entire source code for Anthropic’s Claude Code command line interface application (not the models themselves) has been leaked and disseminated, apparently due ...
The New York Times

This A.I. Tool Is Going Viral. Five Ways People Are Using It.

Claude Code generates computer code when people type prompts, so those with no coding experience can create their own programs and apps. By Natallie Rocha Reporting from San Francisco Claude Code, an ...
InfoWorld

PythoC: A new way to generate C code from Python

PythoC lets you use Python as a C code generator, but with more features and flexibility than Cython provides. Here’s a first look at the new C code generator for Python. Python and C share more than ...
IEEE

A Curvature-Based Adaptive UMAP for Manifold Learning in Clustering and Classification

Abstract: The Uniform Manifold Approximation and Projection (UMAP) algorithm is a powerful tool for dimensionality reduction, renowned for its ability to preserve both local and global data structures ...
Visual Studio Magazine

Dedicated Python Environments Tool Rolls Out in VS Code Update

The Python team at Microsoft is continuing its overhaul of environment management in Visual Studio Code, with the August 2025 release advancing the controlled rollout of the new Python Environments ...
HealthTech

Perturb-Seq in Practice: Dissecting Gene Function with CRISPR + scRNA-Seq

In modern functional genomics, understanding how specific genes control cellular behavior requires both targeted intervention and high-resolution analysis. That’s where Perturb-Seq comes in—a method ...
GEN

Systemic Sclerosis Organ Damage Revealed Through scRNA-Seq

Systemic sclerosis (SSc) is a rare autoimmune disease that can harden the skin, impair blood flow, and damage internal organs such as the lungs and kidneys. But no two patients experience the disease ...